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Data for: Variant filters using segregation information improve mapping of nectar-production genes in sunflower (Helianthus annuus L.)

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DataCite Commons2025-05-27 更新2025-06-14 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Data_for_Variant_filters_using_segregation_information_improve_mapping_of_nectar-production_genes_in_sunflower_Helianthus_annuus_L_/28886726/1
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资源简介:
<b>Genotypic Data (VCFs):</b>All VCF files contain imputed, biallelic SNPs derived from the same population but differ in the filtering strategies applied.<code>Approach1_...vcf.gz</code>: Filtered using hard thresholds (minQ ≥ 100, max Missing ≤ 0.75, MAF ≥ 0.05, inferred single copy).<code>Approach2_...vcf.gz</code>: Applies the same hard filters as Approach 1, with an additional Chi-Square filter (p-value ≤ 0.1).<code>Approach3_...vcf.gz</code>: Filtered using <i>only</i> a Chi-Square filter (p-value ≤ 0.1) on imputed, biallelic SNPs.<b>Phenotypic Data (XLSX):</b><code>nectar_phenotype.xlsx</code>: Contains phenotypic measurements for the population, including individual identifiers (<code>ID</code>) and nectar volume data (<code>nectar_mm_T</code>, <code>nectar_mm</code>).
提供机构:
Ag Data Commons
创建时间:
2025-05-27
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