five

Supply Research Data for 'Genome-scale metabolic analysis of yeasts and bacteria in wine production and their contribution to wine aroma'

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https://www.repository.cam.ac.uk/items/e9c1ec61-6820-4b82-95eb-5f05245dfb21
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This dataset contains 1) Appendix I: four xml format genome-scale metabolic models for S. cerevisiae, O. oeni, K. phaffii, and L. mesenteroides. 2) Appendix II: The py format files containing commands to load the four models and set constraints to the models in python environment. 3) Appendix III: The py format files to call commands to implement FBA and FVA to the models. 4) Appendix IV: The py format files containing commands to rename all the metabolites and give each one a unique ID according to its KEGG ID and its compartment. 5) Appendix V: The flux distribution after implementing FBA and FVA for each of the four models. 6) Appendix VI: The py format files containing commands to set constraints according to the concentration right after alcoholic fermentation. 7) Appendix VII: The flux distribution of the community model built by sc and kp models.

本数据集包含以下内容:1) 附录一:四个用于酿酒酵母(S. cerevisiae)、欧亚酿酒酵母(O. oeni)、帕哈菲酵母(K. phaffii)和肠膜明串珠菌(L. mesenteroides)的基因组规模代谢模型,格式为 XML。2) 附录二:包含用于在 Python 环境中加载上述四个模型并设置模型约束的命令的 py 格式文件。3) 附录三:用于对模型实施稳态流分析(FBA)和灵敏度分析(FVA)的命令的 py 格式文件。4) 附录四:包含对代谢物进行重命名并基于其 KEGG ID 及其细胞区室赋予唯一 ID 的命令的 py 格式文件。5) 附录五:实施 FBA 和 FVA 后,四个模型的流量分布情况。6) 附录六:包含在酒精发酵后根据浓度设置约束的命令的 py 格式文件。7) 附录七:由 sc 和 kp 模型构建的群落模型的流量分布。
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