Comparative single-cell transcriptomic analyses of Drosophila central brains

Datasets and scripts for the comparative single-cell transcriptomic atlases of Drosophila central brains (D. melanogaster, D. simulans, and D. sechellia). Drosophila_brain.zip: Expression matrices for three species (D. melanogaster, D. simulans, and D. sechellia). Plots_Data: Input data for the plots (Plots.R) Annotation_Homologous_celltype.zip: Input data for the homologous cell type annotation and validation (Fig S4s) Scripts.zip: R scripts for plot generation and data analysis Processed_Data: Various input files for scripts FISH_DATA_scripts : FISH raw data and script for plots