Advances in high-throughput sequencing have promoted the collection of reference genomes and genome-wide diversity. However, the assessment of genomic variation among populations has hitherto mainly b
From an evolutionary perspective, retrotransposons (LTR-RTs) activity during stressmay be viewed as a mean by which organisms can keep up rates of geneticadaptations to changing conditions. Potato is
Additional file 4: Data S1. Sequences of the transcriptase reverse gene from 111 families of Jockey clade downloaded from Repbase database [16] that occurs in species of the genus Drosophila.
The repetitive landscapes of mammalian genomes typically display high Class I (retrotransposon) transposable element (TE) content, usually around half of the genome. In contrast, the Class II (DNA tra
Statistical analyses of the relative abundance of TE classes between accessions, as estimated by read counts, at three hierarchical levels of annotation (Likelihood Ratio Chi-square test). (XLSX 9Â kb
