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Parameters used in all simulations unless otherwise noted.

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Values are approximated within biologically relevant ranges, based on known immune system characteristics and previous modeling work [8], [14] (see Appendix S1 for details). Although the exact phase diagram boundaries between regions with different infection outcomes may change at different parameter values, the qualitative dynamics within each infection outcome are not especially sensitive to the exact values of these parameters.
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2014-07-23
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