Phylogenetic reconstruction and functional characterization of the ancestral Nef protein of primate lentiviruses

Supplementary data accompanying the manuscript "Phylogenetic reconstruction and functional characterization of the ancestral<br> Nef protein of primate lentiviruses". group_m_ancestry_consensus_gaps_removed.afa - consensus amino acid sequences for ancestral reconstructions at the six internal nodes in FASTA format node35.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions at the root of the primate lentivirus phylogeny (node 35) for 1,000 trees sampled from the posterior distribution node51.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions for the common ancestor of HIV-1 and SIVsun (node 51) for 1,000 trees sampled from the posterior distribution node52.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions for the common ancestor of HIV-1 and SIVcpz (node 52) for 1,000 trees sampled from the posterior distribution node55.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions for the common ancestor of HIV-1 and SIVcpzptt (node 55) for 1,000 trees sampled from the posterior distribution node56.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions for the common ancestor of HIV-1 groups M and N and SIVcpzptt (node 56) for 1,000 trees sampled from the posterior distribution node59.fa.mafft - multiple sequence alignment of ancestral amino acid sequence reconstructions for the common ancestor of HIV-1 group M (node 59) for 1,000 trees sampled from the posterior distribution