Ribosomal profiling of Gemin4 knockdown cells

NIAID Data Ecosystem2026-03-14 收录

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https://www.ncbi.nlm.nih.gov/sra/DRP009351 数据链接链接失效反馈

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Gemin4 could regulate translation under stress condition. Here, we perform ribosomal profiling with Gemin4 knock down HeLa cells.

创建时间：

2022-12-17

A regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation

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A fundamental goal of genomics is to identify the complete set of expressed proteins. Automated annotation strategies rely on assumptions about protein-coding sequences (CDSs), e.g., they are conserve

NIAID Data Ecosystem90

Genome-wide translation control analysis of developing human neurons

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Ribosome profiling and RNA sequencing raw data of human neural cells derived from H9 embryonic stem cell line.

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RIP-seq analysis.

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RNA-蛋白质相互作用

Translation initiation is a complex and highly regulated process that represents an important mechanism, controlling gene expression. eIF2A was proposed as an alternative initiation factor, however, i

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Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.. Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.

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Hfq is a transcriptional and translational pleiotropic regulator in several bacteria. RNA-Seq, Ribo-Seq and Proteomic analyses were carried out in the wild-type and a hfq deletion strain of Pseudomona

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Code and data for -1 programmed ribosomal frameshifting's effect on codon usage bias analysis.

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密码子使用偏好分析

Here we share the code with which we investigated the presence of a cost of -1 programmed ribosomal frameshifting to translation. With this code, we also analyzed how -1 programmed ribosomal frameshif

Figshare2018-05-25 更新30

Ribosomal profiling of Gemin4 knockdown cells

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