Additional file 4 of Single-cell RNA sequencing of the retina in a model of retinitis pigmentosa reveals early responses to degeneration in rods and cones

Additional file 4. Early differential gene expression analysis in rods. Wild type rod cluster C01 and rd10 rod cluster C02, which were adjacent in the pseudotime analysis, were compared with differential gene expression analysis to determine transcriptomic differences that occurred with increasing pseudotime values. Avg_logFC values larger than 0 indicate that the gene is upregulated in C02 compared to C01.