<b>Code: </b><b>Phylogenetic analysis of </b><b>49,724 high-quality SARS-CoV-2 genome sequences collected in Peru between March 2020 and February 2024 (Figure 2).</b>

This repository contains all code used to produce the analyses included in the paper Sobkowiak et.al, GENOMIC EPIDEMIOLOGY OF SARS-COV-2 IN PERU, 2020-2024, published in Communications Medicine. All code written by Ben Sobkowiak and Amy Langdon. Uploaded November 13, 2025.