Raw data for microbiome abondances for patients 1)Cancer, 2)Chronic Fatigue syndrome(CFS)+ Irritable bowel Syndrome (IBS), 4) Miscellaneous, 6) CFS .

197 genera in this file of raw percentage abundances There are 92 of those genera in the alr file, that have at least 27 non-zero observations. I summed the percentages from the other 105 genera into the “raretax” variable in the alr file The ‘pathgen’ variable in the alr file is the sum of the genera that Atlas designates as ‘pathogenic and opportunistic’: Escherichia-Shigella, Enterococcus, Eggerthella, Fusobacterium, Pseudomonas, Staphylococcus, Citrobacter, Campylobacter, Yersinia, Vibrio, Enterobacter, Clostridiodes, Salmonella and Sphingomonas