Supplementary data for the presence of metabolically relevant genes.
收藏Figshare2020-08-23 更新2026-04-08 收录
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https://figshare.com/articles/Supplementary_data_for_the_presence_of_formate_dehydrogenase_and_related_genes/8970689/5
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Identifications of relevant metabolically relevant genes in other organisms was performed with tblastx against the NCBI NT database (downloaded on 29.04.2020), with an evalue of 0.0001 and the option –max_target_seqs 1000000. For the operons three operons, the whole operon was used for the tblastx search, and presence of an operon was evaluated with a custom script by inspecting the co-occurrence of the genes within a range of 20.000 bp to each other. A gene was considered present if 25% of its basepairs had a match in the target genome. For all other genes, the coding sequence of the gene was used for the tblastx search.<br>This repository contains the result of the blast searches of all these genes/operons, as well as the python code which was used to evalute their presence/absence.<br>
创建时间：
2020-08-23
