GVDB Dataset - AF predictions and Foldseek databases

This repository contains the protein clustering datasets associated with the manuscript “Elucidating the protein interaction network of one of the largest icosahedral capsids in the virosphere" by Hela Safi, Alain Schmitt, Alwena Tollec, Lucid Belmudes, Agathe M. G. Colmant, Olivier Poirot, Sebastien Santini, Matthieu Legendre, Yohann Couté, Hugo Bisio, Chantal Abergel. bioRxiv 2025.10.13.682015; doi: https://doi.org/10.1101/2025.10.13.682015 The dataset includes : GVDB protein sequences in fasta format: gvdb_sequences.fasta GVDB predicted AlphaFold2 models (best model pdb): gvdb_af2_pdbs.tar.gz For high troughput searches, GVDB foldseek database: gvdb_af2_fseekdb.tar.gz For high troughput searches, Virome+GVDB foldseek database: viromegvdb_af2_fseekdb.tar.gzPlease note that the original Virome dataset is available from Nomburg et al., 2024 (https://doi.org/10.1038/s41586-024-07809-y) Virome+GVDB protein sequences in fasta format: viromegvdb_sequences.fasta Virome+GV cluster file in tsv format: viromegv_clusters.tsv