Global early replication disrupts gene expression and chromatin conformation in a single cell cycle
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Additional file 4 of Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9
Additional file 4:Table S3. List of identified locus-specific chromatin interactions at β-globin LCR. The list of locus-specific inter- and intra-chromosomal DNA interactions identified by multiplexed
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SAM domain polymerization links subnuclear clustering of PRC1 to silencing detected using expression data and ChIP experiments
Polycomb group (PcG) proteins mediate heritable but reversible silencing of developmental regulator genes by modifying their chromatin configuration. Accumulating evidence documents a role for PcG pro
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3D chromatin organization involving MEIS1 factor in the cis-regulatory landscape of GJB2
To study GJB2 gene regulation, we used Circular Chromosome Conformation Capture technique (4C) to analyse chromatin interactions inside DFNB1 locus. Overall design: We used two viewpoints, GJB2 promot
NIAID Data Ecosystem10
Promoter Capture-C analysis of Hepatocyte-like cells
The goal of this study is to identify chromatin interactions in hepatocyte-like cells Overall design: Methods: hepatocyte-like cells (HLC) were produced by differentiating three biological replicates
NIAID Data Ecosystem20
Eight in situ Hi-C experiments of mouse OG2 stem cells for 7 different starting material and that were digested by either HindIII (2 samples) or MboI (6 samples) restriction enzymes
In this experiment, we've examined chromatin conformation of OG2 (B6; CBA-Tg(Pou5f1-EGFP)2Mnn/J; stock number 004654) mouse stem cells cultured as described in (Shi et al., 2008), using different amou
NIAID Data Ecosystem10
