Data from Chinthamani et al. "Phylogenetic and Functional Analysis of β-Glucanases in Tannerella forsythia Reveals Distinct GH16 Family Glycoside Hydrolase Lineages in Oral Bacteria"

Data files associated with Chinthamani et al. "Phylogenetic and Functional Analysis of β-Glucanases in Tannerella forsythia Reveals Distinct GH16 Family Glycoside Hydrolase Lineages in Oral Bacteria" 01.HOMD.ALL_8177.run_dbcan_protein_calls_and_annotations: results of run_dbcan on 8,177 HOMD v11.02 genomes 02.GH16_3.proteins: full length sequences for all proteins identified as GH16_3 in initial run_dbcan results (1096), full length sequences for final set of 543 oral proteins included in the tree (limited to hits defined as: "oral" taxa AND having hits from the GH16_3 HMM in run_dbcan GH16_3 AND having a complete active site), and full length sequences for two GH16_8 outgroup proteins included in the tree 03.GH16_3.alignments: MAFFT alignments of GH16_3 domain (run_dbcan GH16_3 HMM hit start/end) of the 543 oral proteins and 2 outgroups in the tree 04.GH16_3.tree: IQ-TREE analyses of MAFFT alignments of domain regions of the 543 oral proteins and 2 outgroups in the tree 05.GH16_3.annos_bakta: bakta annotations of 384 genomes encoding the 543 oral proteins in the tree 06.GH16_3.annos_signalp: signalp6.0 webserver annotations of the 543 proteins in the tree 07.GH16_3.annos_operonmapper: operon-mapper annotations for a reference T. forsythia strain and select other contigs