Extended Data Tables (2, 5, 8, 9, 10, 11) for the manuscript: Microbial transcriptional reprogramming defines tumour-restricted antigens from taxonomically overlapping microbiomes

This dataset contains the large Extended Data Tables (Tables 2, 5, 8, 9, 10, and 11) supporting the manuscript titled "Microbial transcriptional reprogramming defines tumour-restricted antigens from taxonomically overlapping microbiomes". Due to the large file sizes of these specific datasets (e.g., the comprehensive predicted binding affinity matrix in Table 11, and single-cell TCR sequences in Table 8), which exceed the standard submission system limits, they are hosted here to facilitate the peer-review process and ensure data accessibility. Extended Data Table 2 | Taxonomy of the curated tumour microbial reference dataset. Extended Data Table 5 | Peptides identified by immunopeptidomics in tumour sample. Extended Data Table 8 | Single-cell TCR sequences and clonotype annotations. Extended Data Table 9 | Microbial peptides from CRC-associated bacteria. Extended Data Table 10 | T cells annotated with clonal expansion and binding affinity. Extended Data Table 11 | Predicted binding affinity between expanded TCR clonotypes and microbial peptides.