Additional file 5 of A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes

Additional file 5: Supplementary Table 4. Genes predicted on different pseudochromosomes of Brassica nigra Sangam and their orthologs in Arabidopsis thaliana (along with their respective gene blocks) and B. juncea Varuna B genome (BjuB) and B. rapa Chiifu V3.0 (BraA) genome. Column A – gene blocks as identified in A. thaliana; Column B – A. thaliana orthologs with gene id; Column C – paleogenome of B. nigra to which the gene belongs; Column D – predicted B. nigra gene id; Column E – physical position of the genes on the pseudochromosomes; Column F – expression status of the predicted B. nigra genes (“Expressed” means that the gene was found in the transcriptome analysis in this study or other studies described in Supplementary File 2, “Not expressed” represents – expression not found); Column G – B. juncea B genome (BjuB) orthologs with the gene id; Column H –B. rapa V3.0 (BraA) orthologs with the gene id.