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Annotation of Non-redundant ORF unigenes to nucleotide and protein databases of "De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery"

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DataCite Commons2020-09-03 更新2024-07-28 收录
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https://figshare.com/articles/dataset/Krona_pie_chart_Annotation_nR_ORF/7712708
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<b>This data set contains processed results for the annotation of Non-redundant ORF unigenes at nucleotide (</b>NCBI NT, 2018-01-22; RefSeq RNA, 2018-01-22<b>) and protein (</b>Swissprot, 2018-01-22;Refseq protein, 2018-01-22<b>) databases:</b>Table S1: Megablast hit aligment of non-redundant ORF unigenes to reference nucleotide databases.xlsx). Non-redundant ORF unigenes annotated to nucleotide databases (34956 hits, 99.3%)Table S2: Blastx homology search of non-redundant ORF unigenes to reference protein databases.xlsx. Non-redundant ORF unigenes annotated to protein databases (29081 hits, 82.6%)HTML file: Krona_pie_chart_on_Non_redundant_ORF_to_NCBI_nt_and_rnaREF_seq_2018__HTML_html.html. Taxonomic representation for GI numbers assigned to homologous sequences by Megablast Blast+ blastn tool were fetched from taxonomic information at NCBI by Galaxy tool <i>Fetch taxonomic representation</i>. Graphical representation of taxonomy was obtained by Galaxy tool <i>Krona pie chart from taxonomic profile,</i> both implemented at Galaxy Europe (https://usegalaxy.eu)<br>
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figshare
创建时间:
2020-08-31
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