MOESM1 of Genetic analysis of teat number in pigs reveals some developmental pathways independent of vertebra number and several loci which only affect a specific side

Additional file 1: Table S1. Information on 1-Mb windows that explained more than 0.4% of the genomic variation as determined by GENSEL. Description: A listing of the information from all 1-Mb windows (defined in SSC and Mb) that exceeded 0.4% of the genomic variation as determined by GENSEL. The number of SNPs within each window (#SNPs), percentage of genomic variation explained by the SNPs on average across all post-burn-in samples (%Var), the frequency at which a 1-Mb window explained more than the average amount of genomic variation (p > Average), the position of the first SNP (map_pos0) and last SNP (map_posn) in the window. The last eight columns pertain to the SNPs within the 1-Mb window with the largest estimated effect: SNP name, location in build 10.2, effect size, standard error of the estimate, frequency of SNP retention in each sample, allele frequency of the B allele in the population, T-test for the effect and simple P-value corresponding to the T-test.