Single Cell RNA Transcriptomics of Mantle Cell Lymphoma Reveals the Presence of Treatment-Resistant Subclones at the Time of Diagnosis - Supplementary Data Tables

Supplementary Table 4. Results of optical genomic mapping for patient P009. The table lists genomic aberrations shared for diagnosis and relapse and those exclusive at both timepoints.

Supplementary Table 6. Lists of gene markers for DGs subclones compared to DGex for each patient. An output of scoreMarkers ranked by mean AUC and filtered by mean AUC above 0.5.

Supplementary Table 7. Reactome pathways gene set analysis of gene markers (ranked by mean AUC) of DGs subclones compared to DGex. First sheet shows intersecting pathways for all four patients with aggressive MCL.

Supplementary Table 8. Copy number variant segments predicted using whole exome sequencing data. Results of copy segments analysis and copy number calling using CNVkit (version 0.9.1).

Supplementary Table 9. Short nucleotide variants detected in whole exome sequencing data of P069 at diagnosis in PBMC and at relapse in bone marrow and intestine samples. Results of Mutect2 variant calling algorithm (GATK version 4.5.0.0).

SCEs.tar.gz - an archive which contains two Single Cell Experiment objects: sce.total.rds which contains all cell types with their annotations and sce.MCL.rds which contains the tumor cells with their inferred CNVs.