Additional file 11 of Single-cell RNA sequencing of the retina in a model of retinitis pigmentosa reveals early responses to degeneration in rods and cones

Additional file 11. Differential gene expression analysis among rd10 and wild-type cones in cluster C04. Differential gene expression analysis was performed to determine transcriptomic changes in rd10 cones compared to wild types at P21 . All transcripts were additionally checked for significant differential expression in early rod degeneration (Additional file 2) or late rod degeneration (Additional file 3). Avg_logFC values larger than 0 indicate that the gene is upregulated in rd10 cones compared to wild types. DE: differentially expressed.