Additional file 2 of Discordant evolution of mitochondrial and nuclear yeast genomes at population level

Additional file 2 : Table S1 Overview of the S. cerevisiae collection. Profile id column indicates the unique combination of CDS alleles. Columns reporting the CDS alleles indicate the id of the sequence as reported in the multi fasta database of the unique sequences (http://1002genomes.u-strasbg.fr/files/MitochondrialGenomes/allNonRedundantAlleles.tar.gz). Introns and endonucleases presence/absence is coded 1, for presence, or 0, for absence. NA indicate unavailable sequence. Endonucleases and omega intron were identified by blast search using a cut-off of 90% of identity on 90% of sequence overlap with a reference sequence (see materials and methods). nt in the reference are indicated with the upstream nucleotide position. Positions of the GC cluster refers to the starting position in the reference sequence. Cluster which are absent in the reference sequence are indicated with the first upstream position.