Sequence Alignments of Major Donor, Recipient, and Progeny Strains in This Study, Aligned with the Corresponding Region of the TIGR4 Sequence

Polymorphic sites are shown across the entire sequenced region upstream and downstream of the capsular locus. Black arrows highlight the SNPs in the upstream and downstream crossover regions; the locations of pbp2x, pbp1a, and the (missing) capsular locus are also shown. Strains are labeled A and B to correspond to the strains involved in the two main recombinational events shown in Figure 2. (95 KB PPT)