Breinholt_et_al_DS4

Dataset 4 (shallow_probe+flanks). Nexus file containing 749 loci and 48 taxa. Alignments were trimmed with a density of 60% and entropy of 1.5 using alignment_DE_trim.py and flacking regions were processed with the flank_dropper.py to remove head or tail sequences using 2 standard deviations for both the head and tail. See taxa_list.txt for species names of each taxon, this is a nucleotide nexus file with a CHARSET that defines each gene. For further information see Breinholt et al. (2017) and Breinholt_et_al_Supplementary_File_1_S1-S11.xlsx in this Dryad package for more details.