Database of Ca2+ transients from single cell E. coli measurements
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https://zenodo.org/record/7893406
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Database configuration
To efficiently compare conditions from over 7 Tb of image data, we constructed an HDF5 database with the extracted fluorescent traces for each experiment. The database was configured such that the fluorophore specifies the first group (e.g., '/gcamp'). The second group is the unique experimental identifier generated at the time of the experiment (e.g., '/20210322_5 Hz_gcamp_90pts'). The third group specifies the variable name (See Table below for description). The database is also available from https://bitbucket.org/meyerct6/soc_bacteria_repo/src/master/ in (Database/soc_bacteria_database.h5) and can be used to recreate most figures in the manuscript.
Description of HDF5 database variables for each experiment
/meanintMatG
Matrix of mean intensity within each segmented cell (rows) at all time points (columns).
/corrIntMatG
Matrix of mean intensity corrected for photobleaching.
/fitRsqr
Vector of R-squared fit values for photobleach equation.
/timeMat
Matrix of acquisition times for each cell (rows) at every timepoint (columns).
/heat_kill
Boolean vector denoting whether the cell was heat killed
创建时间：
2023-05-04
