Additional file 1 of Identification of ceRNA-vsiRNA-mRNA network for exploring the mechanism underlying pathogenesis of sugarcane mosaic virus in resistant and susceptible maize inbred lines

Additional file 1: Table S1. Statistical analysis of small RNAs from Mock- and SCMV-inoculated resistant and susceptible maize inbred lines. Table S2. Statistical analysis of RNA-seq data from 12 cDNA libraries of maize samples. Table S3. The differentially expressed circRNAs in Mo17 plants. Table S4. The differentially expressed circRNAs in Chang7-2 plants. Table S5. The differentially expressed lncRNAs in Mo17 plants. Table S6. The differentially expressed lncRNAs in Chang7-2 plants. Table S7. The differentially expressed mRNAs in Mo17 plants. Table S8. The differentially expressed mRNAs in Chang7-2 plants. Table S9. vsiRNAs with high abundance in SM libraries. Table S10. vsiRNAs with high abundance in SC libraries. Table S11. GO analysis of target genes of selected vsiRNAs from MM libraries. Table S12. GO analysis of target genes of selected vsiRNAs from MC libraries. Table S13. KEGG analysis of target genes of selected vsiRNAs from MM libraries. Table S14. KEGG analysis of target genes of selected vsiRNAs from MC libraries. Table S15. GO terms and KEGG pathways for the target genes of selected 10 vsiRNAs. Table S16. The ceRNA networks in Mo17 plants. Table S17. The ceRNA networks in Chang7-2 plants. Table S18. The important vsiRNAs and their associated circRNAs, lncRNAs and mRNAs. Table S19. The primers used in this study.