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Reconstructing marine plankton food web interactions using DNA metabarcoding - Supplementary Dataset

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NIAID Data Ecosystem2026-03-11 收录
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https://zenodo.org/record/3731295
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资源简介:
### This repository contains two separate datasets: 1. *16S rRNA* gene dataset and 2. *18S rRNA* gene dataset.   ### The data is stored as ASV-file (Amplicon sequence variants) including: 1. Exact sequence of ASV 2. Taxonomic afiliation 3. Read count matrix per sample sequencing library.   ### Each dataset comes with a metadata-file. The metadata files contains the following variables: - **NGI.-Sample_ID** The Unique Sequenceing Library ID. - **SAMPLE_ID** Identification of environmental *In_Situ* sample event. - **SAMPLE_date** Date of sampling (YYY-MM-DD). - **SAMPLE_type** Type of sample (Water or Zooplankton). - **SAMPLE_method** Device used for sampling *In-Situ*. - **SAMPLE_depth** Depth of sampling. - **GENE** Marker gene. - **INNER_primer** Primer pair ID used for PCR. - **INNER_blocking** Weather blocking PNA has been used for PCR or not. For Zooplankton saples:   - **SORTED_type** Taxonomic affiliation of Zooplankton (Blank for water samples). - **SORTED_genus** Genus of sorted Zooplankton species (Blank for water samples). - **SORTED_number** Number of individuals sorted in the sample.   For Water samples:   - **FILTER_poresize** Size in micrometer. - **FILTER_material** - **FILTER_volume** Volume of water filtered (L).
创建时间:
2020-03-31
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