Additional file 4 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

Additional file 4. Manually Curated DESR Gene Data (Cuffdiff2). DESR gene lists were manually curated and parsed into eleven functional categories using a literature search. Tabs: 3 Day DESR, 11 Day 1 WK DESR, 3 WK DESR: Manually curated spreadsheets for each time point, 3 days, 11 days/1 week, and 3 weeks, respectively, providing Cuffdiff2 data for each gene for tadpole SCI hindbrain (even numbered rows) and juvenile frog ONC (odd numbered rows). Column A, surgical condition; Columns B - N, relevant Cuffdiff2 data for each gene under each surgical condition (see Additional_File1_Differential_Expression_Analysis_by_Cuffdif.xlsm for abbreviations and column annotations). Gene symbols (Column B) in green and red were up-regulated and down-regulated, respectively, in successfully regenerative tissues relative to controls. Column O, primary functional category (NA, gene has not been assigned a human ortholog); Column P, secondary functional category, if relevant; Column Q, Manually curated notes, providing additional information on the expression behaviors of the other homeologs of this gene (even numbered rows), and a statement on the function of the gene that lead to its being placed in a particular functional category, followed by the literature reference supporting it.