SNP data from Neurospora intermedia
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下载链接:
https://figshare.com/articles/dataset/SNP_data_from_Neurospora_intermedia/6974093
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资源简介:
This dataset contains a VCF file with SNPs from 21 Neurospora intermedia and 5 N. metzenbergii strains mapped to the genome assembly of N. intermedia strain 8807.
SNPs are generated from raw paired-end reads which have been deposited to the Sequence Read Archive
(SRA) in BioProjects PRJNA486257
(http://www.ncbi.nlm.nih.gov/bioproject/486257).
See Svedberg et al., (2018) "Convergent evolution of complex
genomic rearrangements in two fungal meiotic drive elements" for further
information: https://www.nature.com/articles/s41467-018-06562-x (DOI:10.1038/s41467-018-06562-x)Supplementary Table 11 contains Illumina sequencing statistics.
Full list of strains: 10411, 1785, 1786, 1787, 1795, 1832, 1938, 2316, 2365, 3194, 5119, 5124, 6249, 6263, 6595, 6795, 7402, 7426, 7427, 7429, 8761, 8767, 8769, 8793, 8853, P4149
All strains are referred to by their ID numbers at the Fungal Genetics Stock Center (www.fgsc.net), where they also can be ordered.
The reference genome of strain 8807 was released with the paper:
Sun et al. (2017). Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma. Nature Communications 8, 1140. (https://www.nature.com/articles/s41467-017-01317-6)It can be downloaded here:
Sun,
Yu; Svedberg, Jesper; Hiltunen, Markus; Corcoran, Pádraic; Johannesson,
Hanna (2017): High-quality Neurospora tetrasperma genome assemblies.
figshare. Dataset.https://figshare.com/articles/High-quality_Neurospora_tetrasperma_genome_assemblies/5327515
创建时间:
2018-09-19



