De novo genome assemblies of Neurospora intermedia, N. metzenbergii and N. crassa, based on Illumina HiSeq reads
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https://figshare.com/articles/dataset/De_novo_genome_assemblies_of_Neurospora_intermedia_N_metzenbergii_and_N_crassa_based_on_Illumina_HiSeq_reads/6979925
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This dataset contains in total 29 de novo genome assemblies of three different species of the fungus <i>Neurospora</i> (21 N. intermedia, 5 <i>N. metzenbergii</i> and 3 <i>N. crassa</i>). All strains are listed using the strain number from the Fungal Genetics Stock Center (www.fgsc.net), where they also can be ordered from.<br><br>These genome assemblies were assembled from paired-end Illumina HiSeq 2500 reads using ABySS 1.3.7 in the following way:<br>abyss k=64 a=2 n=10 s=200 J016 in="read1.fastq.gz read2.fastq.gz" name="assembly_name"<br><br>Raw paired-end reads have been deposited in the Sequence Read Archive (SRA) in BioProjects PRJNA486257 (http://www.ncbi.nlm.nih.gov/bioproject/486257).<br><br>Strain list:<br><br>FGSC # | Species<br>-------+----------------------<br> 1785 | Neurospora intermedia<br> 1786 | Neurospora intermedia<br> 1787 | Neurospora intermedia<br> 1795 | Neurospora intermedia<br> 1832 | Neurospora intermedia<br> 1938 | Neurospora intermedia<br> 2316 | Neurospora intermedia<br> 2365 | Neurospora intermedia<br> 3194 | Neurospora intermedia<br> 5124 | Neurospora intermedia<br> 6249 | Neurospora intermedia<br> 6263 | Neurospora intermedia<br> 6595 | Neurospora intermedia<br> 7402 | Neurospora intermedia<br> 7426 | Neurospora intermedia<br> 7427 | Neurospora intermedia<br> 7429 | Neurospora intermedia<br> 8761 | Neurospora intermedia<br> 8767 | Neurospora intermedia<br> 8769 | Neurospora intermedia<br> 8793 | Neurospora intermedia<br> 5119 | Neurospora metzenbergii<br> 6795 | Neurospora metzenbergii<br> 8853 | Neurospora metzenbergii<br> 10411 | Neurospora metzenbergii<br> P4149 | Neurospora metzenbergii<br> 4723 | Neurospora crassa<br> 4829 | Neurospora crassa<br> 8863 | Neurospora crassa<br><br><br>For further information on the strains and the genome assemblies, please see:<br>Svedberg et al., (2018) "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements": https://www.nature.com/articles/s41467-018-06562-x (DOI:10.1038/s41467-018-06562-x)<br>Supplementary Table 11 contains Illumina sequencing statistics.<br>
提供机构：
Mozgová, Iva; A. Vogan, Aaron; Lascoux, Martin; Johannesson, Hanna; Hosseini, Sara; Hennig, Lars; Chen, Jun; Svedberg, Jesper; Manitchotpisit, Pennapa; Hammond, Thomas M.; Abusharekh, Anna
创建时间：
2018-09-19
