Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks
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Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments"
Research objective: determine whether pseudotopological models for DNA loop-extruding SMC complexes can explain roadblock bypass experiments (referring to https://doi.org/10.1016/j.celrep.2022.111491)
DataCite Commons2024-01-26 更新50
Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments"
Research objective: determine whether pseudotopological models for DNA loop-extruding SMC complexes can explain roadblock bypass experiments (referring to https://doi.org/10.1016/j.celrep.2022.111491)
DataCite Commons2024-01-26 更新30
Data analysis results for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions"
README for [10.5281/zenodo.7074561](https://doi.org/10.5281/zenodo.7074561). See file `2021-modle-paper-001.tree` for the file and folder layout after extracting all TAR archives from [10.5281/zenodo.
DataCite Commons2025-06-04 更新30
Data analysis results for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions"
Data part of this archive was generated for the following publication: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions". Preprint: https://www.biorxiv.org/content/10.11
DataCite Commons2025-11-11 更新50
Data accompanying the preprint "SMC motor proteins extrude DNA asymmetrically and contain a direction switch"
Research objective: determine whether DNA loop-extruding SMC complexes extrude symmetrically or asymmetrically and determine for cohesin whether NIPBL exchanges affects direction changesType of resear
4TU.ResearchData2024-01-26 更新30
