Additional file 9 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Additional file 9:Summary of LD estimates. The file contains the exact test for LD, genetic distances between pairs of SNP markers and minor allele frequencies (MAF) of alleles used for LD calculation. The pair-wise LD was measured using the squared allele-frequency correlations r2 according to Weir [50]. The statistical significance of individual r2 estimates was calculated by the exact test following the procedure described by Weir [50]. The false discovery rate (FDR) was established at 0.01 using the Benjamini & Hochberg method [52]. (XLSX 3 MB)