PaperBLAST December 2018 release

Source code and data files for PaperBLAST and Curated BLAST for Genomes, as of December 7, 2018

Exploding the tarball will create a PaperBLAST/ directory. The SQLite3 database, fasta file, and BLAST database are in the data/ subdirectory. The code is in the cgi/ bin/ and lib/ subdirectories. The main CGI scripts are cgi/litSearch.cgi for PaperBLAST and cgi/genomeSearch.cgi for Curated BLAST. For Curated BLAST to fetch genomes from JGI's IMG, it needs a valid username and password, which should be placed on separate lines in the private/.JGI.info file. If you plan to run a public web server, make sure that the contents of private/ are not made accessible.