Additional file 3 of Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks

Additional file 3: Supplementary Table S1. The phenotype data of alkali injury index (AID) of hybrids derived from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila) in 2015–2017. Supplementary Table S2. The phenotype data of salt injury index (SID) of hybrids derived from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila) in 2015–2017. Supplementary Table S3. The phenotype data of salt-alkali injury index (SAID) of hybrids derived from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila) in 2016–2017. Supplementary Table S4. Phenotypes of extremity segregant bulks for injury indices of salt, alkali, and salt-alkali in hybrids derived from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila) Supplementary Table S5. Summary of the BSA-seq data in extremity bulks of tolerant and sensitive using hybrids derived from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila). Supplementary Table S6. Summary of QTLs for injury indices of salt, alkali, and salt-alkali identified via BSA-seq in hybrid population from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila). Supplementary Table S7. Candidate genes for salt, alkali, and salt-alkali tolerance screened by parental re-sequencing, BSA-seq, and RNA-seq in a hybrid population from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila). Supplementary Table S8. Summary of candidate genes for salt, alkali, and salt-alkali tolerance screened by parental re-sequencing, BSA-seq, and RNA-seq in a hybrid population from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila). Supplementary Table S9. samples of root tissue for RNA-seq taken from salt, alkali, and salt-alkali treated hybrids from ‘Baleng Crab’ (Malus robusta) × ‘M9’ (M. pumila). Supplementary Table S10. Summary of the sequencing reads and reads mapping in RNA-seq.