StarDist Adipocyte Segmentation Training data, Training Notebook and Model
收藏NIAID Data Ecosystem2026-03-14 收录
下载链接：
https://zenodo.org/record/7003908
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资源简介：
Data from H&E human bone marrow whole slide scanner images used in the paper: "MarrowQuant 2.0: a digital pathology workflow assisting bone marrow evaluation in clinical and experimental hematology" (https://doi.org/10.21203/rs.3.rs-1860140/v1)
292 image patches
Ground truth were manually annotated using QuPath and split into 263 images for training and 29 for validation.
Training in StarDist was done on a Windows 10 PC with an RTX 2080 GPU. The requirements file for installing a Python 3.7 environment to run the attached notebooks is provided (stardist-val.txt).
The StarDist model configuration can be found in the Jupyter Notebook :
Adipocyte Training.ipynb
Model validation and metrics can be performed by running the notebook after finishing the Adipocyte Training notebook.
Quality Control.ipynb
创建时间：
2022-10-25
