Supplement 1. R code for simulating the effect of chytridiomycosis on survival and OpenBUGS code for fitting the hierarchical model of the probability of infection, the hierarchical linear model of zoospore load, and the Cormack-Jolly-Seber model incorporating the hierarchical model of the probability of infection.

File List
pr_infection_model.txt (MD5: cd685fbdf0eedad7613c370ec0e4847a)

zoospore_load_model.txt (MD5: a135ca5b1cc6b7af5dbc749bbabb43db)

CJS_model.txt (MD5: cc0bf7a426c7ddd03a4219b1677a7a72)

simulation_code.txt (MD5: 5ace92e7fd8030ef4a89ba5f524a3ffa)
Description
pr_infection_model.txt: OpenBUGS code for fitting the hierarchical model of the probability of infection. Data is included.

zoospore_load_model.txt: OpenBUGS code for fitting the hierarchical linear model of zoospore load. Data is included.

CJS_model.txt: OpenBUGS code for fitting the Cormack-Jolly-Seber model, incorporating the hierarchical model of the probability of infection. Data is included.

simulation_code.txt: R code for simulating the effect of chytridiomycosis on survival. The code provides an example of estimating the change in probability of survival between the chytrid-exposed and chytrid-free scenarios for a single wetland in a single month.