EcoAdvDepression Dataset

This record corresponds to the data collected, analysed, and used in the "Investigating Context-Specific Advantages of Depression-like behaviour in Wild-type Zebrafish (Danio rerio)" paper. The total dataset size exceeds 50GB and has hence been split into individual Zenodo records and have been linked in the table listed below. This record consists of the data used to train the YOLOv8 Model as well as the various train-time inferences and parameters of the model. The final trained model is also linked in this record.

Intervention Stage

Data

Link

Description

Pre

Processed

https://doi.org/10.5281/zenodo.13733970

Processed videos of social interaction, converted to grey-scale, removed audio, and in .MP4 format, at the pre-intervention stage. Contains video data for 26 fish with alternatively positioned shoals, totalling 52 videos.

Pre

Resized

https://doi.org/10.5281/zenodo.13735945

Final cropped video files used for analysis at the pre-intervention stage. Model predictions were run on these processed video files. Contains video data for 26 fish with alternatively positioned shoals, totalling 52 videos.

Pre

Tracked, Metrics, and Clean Tracked Centres

https://doi.org/10.5281/zenodo.13743184

Tracked files include the raw frame-by-frame predictions of the YOLOv8 Model over the Resized video files for 26 fish across 52 trials stored as CSV files. Clean Tracked Centres include the cleaned predictions consisting of the centres of the predicted bounding boxes, additionally accounting for incorrect predictions for 26 fish across 52 trials stored as CSV files. Metrics consist of the analysed inferences of all the clean tracked centres producing various movement and social interaction parameters in a single CSV file. Data for the pre-intervention stage.

Post

Processed

https://doi.org/10.5281/zenodo.13754882 

Processed videos of social interaction, converted to grey-scale, removed audio, and in .MP4 format, at the post-intervention stage. Contains video data for 26 fish with alternatively positioned shoals, totalling 52 videos.

Post

Resized

https://doi.org/10.5281/zenodo.13743218

Final cropped video files used for analysis at the post-intervention stage. Model predictions were run on these processed video files. Contains video data for 26 fish with alternatively positioned shoals, totalling 52 videos.

Post

Tracked, Metrics, and Clean Tracked Centres

https://doi.org/10.5281/zenodo.13743210

Tracked files include the raw frame-by-frame predictions of the YOLOv8 Model over the Resized video files for 26 fish across 52 trials stored as CSV files. Clean Tracked Centres include the cleaned predictions consisting of the centres of the predicted bounding boxes, additionally accounting for incorrect predictions for 26 fish across 52 trials stored as CSV files. Metrics consist of the analysed inferences of all the clean tracked centres producing various movement and social interaction parameters in a single CSV file. Data for the post-intervention stage.