Datasets and additional data used in the paper: Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025). “Abstractions for RNA Secondary Structure Analysis.”

Datasets and Additional DataThis repository contains the datasets and additional data used in the paper:Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025).“Abstractions for RNA Secondary Structure Analysis.”Folder: 5S_Ribosomal_RNAThis folder contains the data used for the experiment on 264 5S ribosomal RNA (5S rRNA) molecules from the CRW2 database.Subfolder Molecules_DBN/Contains the secondary structures of the 264 RNAs in dot-bracket notation.Subfolder Molecules_Abstractions_DBN/Shape/Contains the computed Shape abstractions and a text file with the counts of different shapes.Subfolder Molecules_Abstractions_DBN/Core/Contains the computed Core abstractions and a text file with the counts of different cores.Subfolder Molecules_Abstractions_DBN/Core_Plus/Contains the computed Core Plus abstractions and a text file with the counts of different core-plus patterns.Folder: Pseudoknot_MotifsThis folder contains the data used for the experiment on 332 RNA pseudoknots from the Pseudobase++ database.Molecules in dot-bracket notationSubfolder Molecules_DBN/Pseudoknot_H/Contains the secondary structures of the 253 RNAs with H-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_HLout/Contains the secondary structures of the 64 RNAs with HL_out-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_HLin/Contains the secondary structures of the 4 RNAs with HL_in-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_LL/Contains the secondary structures of the 11 RNAs with LL-type pseudoknots.Computed abstractionsSubfolder Molecules_Abstractions_DBN/Shape/Contains the computed Shape abstractions and a text file with the counts of different shapes for each pseudoknot type (H, HL_out, HL_in, LL).Subfolder Molecules_Abstractions_DBN/Core/Contains the computed Core abstractions and a text file with the counts of different cores for each pseudoknot type (H, HL_out, HL_in, LL).Subfolder Molecules_Abstractions_DBN/Core_Plus/Contains the computed Core Plus abstractions and a text file with the counts of different core-plus patterns for each pseudoknot type (H, HL_out, HL_in, LL).