The numbers of sequences with successfully predicted loop/junction structures for (I) all the 8452 RNA loops/junctions in TEST-I (II) the 7459 RNA loops and junctions in TEST-II and (III) the 1119 RNA loops and junctions in TEST-III.

For each dataset, the numbers in columns are calculated with the (“”, “true” potential parameters) and (“”, “extracted” potential parameters), respectively. The potentials are obtained from the RNA09 database. The “Top-” in the first column means that the “correct” structure is in the top- lowest-potential conformations.