Polymorphisms identified in UNC Nigerian F5 Group 1.

Data from direct sequencing of Group 1 individuals are summarized. Polymorphic nucleotides are indicated in lower case, with flanking and intervening nucleotides in upper case. Nucleotides absent from an allele (i.e. indel polymorphism) are represented by an equivalent number of dashes. Where a single SNP, multi-nucleotide polymorphism or indel polymorphism was found, the variants are shown within the same sequence expression. For amplicons with more than one polymorphic region, the genotype of each allele is listed individually. Where additional polymorphic regions were found in other datasets but were not polymorphic in the dataset in question, the genotypes at the additional variant positions are shown in parentheses. Primer regions were excluded when determining the number of base pairs screened for each amplicon. The positions of the polymorphic nucleotides are given as positions within the full amplicon sequence, including primer regions. Full genotype ratios recovered in the dataset are given for all genes except hhex, where two genotypes arising from allelic dropout are omitted for brevity. Abbreviations: bp, base pairs; cds, coding sequence; nt, nucleotide; UTR, untranslated region.