Data from: Contrasting insights provided by single and multispecies data in a regional comparative phylogeographic study

TCS input filesThis is a ZIP file consisting of 33 separate input files for the program TCS version 1.21 (Clement et al. 2000), which creates haplotype networks. Each file is a separate species. All specific haplotype details can be found in Table S2 of the online Supporting information for this paper. Species codes: AA = Ambassis agassizi, AM = Ambassis marianus, AS = Australatya striolata, CA = Caridina indistincta "A", CB = Caridina indistincta "B", CC = Caridina indistincta "C", CH = Cherax dispar "C", CM = Craterocephalus marjoriae, CP = Caridina sp. "D", CS = Craterocephalus stercusmuscarum, GA = Gobiomorphus australis, GP = Glossamia aprion, HC = Hypseleotris compressa, HG = Hypseleotris galii, HK = Hypseleotris klunzingeri, HM = Hypseleotris sp. Midgleys, LU = Leiopotherapon unicolor, MA = Mogurnda adspersa, MD = Melanotaenia duboulayi, MT = Macrobrachium tolmerum, MU = Macrobrachium australiense, NE = Nematalosa erebi, NO = Nannoperca oxleyana, P4 = Paratya australiensis "4", P6 = Paratya australiensis "6", PA = Philypnodon macrostomus, PG = Philypnodon grandiceps, PM = Pseudomugil mellis, PR = Porochilus rendalhi, PS = Pseudomugil signifer, RO = Rhadinocentrus ornatus "SEQ", RS = Retropinna semoni "SEQ", TT = Tandanus tandanus.Arlequin input filesThis is a ZIP file consisting of 33 separate Arlequin input files. Arlequin version 3.5 (Excoffier et al. 2005) was used to calculate overall ΦST for each species separately (populations grouped into river basins). All specific haplotype details can be found in Table S2 of the online Supporting information for this paper. Species codes: AA = Ambassis agassizi, AM = Ambassis marianus, AS = Australatya striolata, CA = Caridina indistincta "A", CB = Caridina indistincta "B", CC = Caridina indistincta "C", CH = Cherax dispar "C", CM = Craterocephalus marjoriae, CP = Caridina sp. "D", CS = Craterocephalus stercusmuscarum, GA = Gobiomorphus australis, GP = Glossamia aprion, HC = Hypseleotris compressa, HG = Hypseleotris galii, HK = Hypseleotris klunzingeri, HM = Hypseleotris sp. Midgleys, LU = Leiopotherapon unicolor, MA = Mogurnda adspersa, MD = Melanotaenia duboulayi, MT = Macrobrachium tolmerum, MU = Macrobrachium australiense, NE = Nematalosa erebi, NO = Nannoperca oxleyana, P4 = Paratya australiensis "4", P6 = Paratya australiensis "6", PA = Philypnodon macrostomus, PG = Philypnodon grandiceps, PM = Pseudomugil mellis, PR = Porochilus rendalhi, PS = Pseudomugil signifer, RO = Rhadinocentrus ornatus "SEQ", RS = Retropinna semoni "SEQ", TT = Tandanus tandanus.MTML-msbayes input filesThis is a ZIP file consisting of 17 pairs of input files for MTML-msBayes (Huang et al. 2011), which estimates the number of divergence events. Each separate MTML-msBayes analysis requires 2 input files ("batch.masterIn.fromIM" and "obsSS.txt"). These have been labeled to differentiate the different analyses, which correspond to those listed in Table 2 of the paper. Basin Codes et al: BRI = Brisbane, GOL = Gold Coast, LOG = Logan-Albert, MCY = Maroochy, MRY = Mary, NOO = Noosa, PIN = Pine, TCB = Tin Can Bay, CR = Control Region, PS = Pseudomugil signifier.