Manual organelle segmentations (crop238) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of Interphase COS-7 cell (jrc_cos7-1b)

This acquisition is part of the CellMap 2024 Segmentation Challenge
Challenge DOI: https://doi.org/10.25378/janelia.c.7456966Challenge Website: https://cellmapchallenge.janelia.org/Annotation description: Dense segmentations of nucleus, mitochondria in jrc_cos7-1b using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.
Annotation ID: crop238
Primary Annotator: Alyson Petruncio
Annotation protocol: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)
Software: Amira 3D 2021.1, Classic Segmentation Workroom
Annotated voxel size (nm): 8 x 8 x 8 (x, y, z)
Annotated data dimensions (µm): 12.8 x 7.2 x 2.23 (x, y, z)
Annotated data offset (nm): 1603 x 803 x 3 (x, y, z)
Classes annotated: nucleus, mitochondria
Dataset URL: s3://janelia-cosem-datasets/jrc_cos7-1b/jrc_cos7-1b.zarr/recon-1/labels/groundtruth/crop238
Source (EM) dataset ID: jrc_cos7-1b
Source (EM) voxel size (nm): 2 x 2 x 2 (x, y, z)
Source (EM) data dimensions (µm): 40.69 x 9.05 x 2.23 (x, y, z)
Source (EM) DOI: https://doi.org/10.25378/janelia.24944601
Visualization website: https://openorganelle.janelia.org/datasets/jrc_cos7-1b
Publication: CellMap Segmentation Challenge, 2024.
The CellMap Project Team during this time consisted of: David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.
The CellMap Project Team Steering Committee during this time consisted of: Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.