Additional file 1: Table S1. of Origin and phylogenetic status of the local Ashanti Dwarf pig (ADP) of Ghana based on genetic analysis

Number of animals sampled per agro-ecological region, based on farms and locations. Table S2. A summary of mitochondrial haplotypes. Table S3. Results from Y chromosome derived polymorphisms. Table S4. Summary of coat colour information, sequence polymorphisms, and predicted haplotypes in the MC1R gene from animals collected in Ghana. Table S5. A summary of the intervals defined by FST analysis, with genes, flanking genes for each intergenic region, and genes at peaks commonly seen between between ADP subset 1 and ADP subset 2 comparisons with other breeds identified in bold. Table S6. DAVID functional annotation results showing clustering of genes (p < 0.5) from the intervals identified in comparisons with human alignments. Table S7. Information on an individual gene basis for genes containing a peak SNP, including Entrez gene summary, gene associations, and gene association classifications based on DAVID analysis with human based databases for extraction of maximum information. (XLSX 78 kb)