Candidate domain-fusion templates for structure modeling of a SpaK/SpaR complex.

1The domains from the structure models of SpaK and SpaR were compared
with all structures from PDB. Listed are those domain-fusion
templates for which at least one domain from each of SpaK and SpaR
had structure similarity
LGA_S> = 35%.
2The residue ranges in modeled SpaK domains are: SpaK_d1:
219–300 and SpaK_d2: 301–459, and the residue
ranges in modeled SpaR domains are: SpaR_d1: 1–117 and
SpaR_d2: 118–220.
3N1 denotes a number of residues in the structural domain-fusion
template.
4N2 denotes the number of residues in the corresponding domain from
SpaK or SpaR.
5N denotes the number of superimposed C-alpha atoms that fit under a
distance of 5.0 Angstroms.
6RMSD is the root mean square deviation of N corresponding C-alpha
atom pairs from the calculated structural alignment.
7Seq_ID denotes the sequence identity in % between the
domain-fusion template and the corresponding SpaK or SpaR domain
calculated from the structural alignment.
8LGA_S is a measure of the level of structure similarity [20] identified between the domain-fusion
template and the corresponding domain from SpaK or SpaR.
Domains from the structural models of SpaK and SpaR were compared
with all structures from PDB. Listed are the domain-fusion templates
that for at least one domain from the SpaK or SpaR model had a level
of structure similarity LGA_S above 37%. LGA_S scores are
reported for alignments between each modeled domain of SpaK or SpaR
and a domain-fusion template domain. The residue ranges in modeled
SpaK domains were: SpaK_d1: 219–300 and SpaK_d2:
301–459, and the residue ranges in modeled SpaR domains
were: SpaR_d1: 1–117 and SpaR_d2: 118–220.