16S rRNA Metagenomics Data on the Bacterial Communities in Integrated Poultry-Fish Farm Ponds

The data include bacterial taxonomic profile and abundance in pond water samples collected from a farm practicing an integrated poultry farming system, in South-West, Nigeria. The data was generated from the amplification and sequencing of the V3-V4 region of the rRNA gene using the Miseq Illumina sequencing platform and different bioinformatic tools.