Scuderi S, Kang T-Y, Jourdon A et al., Cell Stem Cell 2025 - Mendeley Data Figures

SUPPORTING DATA FIGURES for Scuderi, Kang, Jourdon et al., (2025). Specification of human brain regions with orthogonal gradients of WNT and SHH in organoids reveals patterning variations across cell lines. Cell Stem Cell.

The PDF includes six supplementary figures with detailed titles and legends.

Mendeley Data Figure 1: scRNA cluster markers in organoids, RNA velocity, projection to fetal mouse brain, and disorder-risk genes expression. Related to Figure 2.
Mendeley Data Figure 2: Comparison of gene expression profiles and label transfer results between organoids and fetal brain atlas. Related to Figure 2.
Mendeley Data Figure 3: Differential expression of genes between Duo-MAPS position in progenitor cells, immunostaining quantifications across positions. Related to Figure 3.
Mendeley Data Figure 4: Donor- and line-dependent variations during patterning and in undifferentiated iPSCs. Related to Figure 5
Mendeley Data Figure 5: SCENIC-derived regulatory network analysis at d64. Related to Figure 6.
Mendeley Data Figure 6: Comparison and integration of Duo-MAPS cell type diversity with Human Neural Organoid Cell Atlas (HNOCA) datasets. Related to Figure 2 and 3.