Virus Sequences and Data Tables related to the Cenote Human Virome Database v1.1

CHVD_virus_sequences_v1.1.tar.gz= full nucleotide sequences of 45,033 dereplicated (95% ANI, 85% AF) virus OTUs. version 1.1

CHVD_virus_core_sequences_v1.1.tar.gz = nucleotide subsequences of CHVD_virus_sequences_v1.1, trimmed down to virus cores

CHVD_clustered_mash99_v1.tar.gz = nucleotide sequences of virus contigs identified in the study LIGHTLY dereplicated. There will be lots of redundant sequence in this compared to the "CHVD_virus_sequences_v1.1".

human_anelloviruses_not_in_genbank1.tar.gz = full length anellovirus genomes without close cognates in GenBank

phage_encoded_spacers_v1.0.tar.gz = sequences of spacers encoded by phage from the Cenote Human Virome Database

HV3_table1_bioprojects_w_body_location.xlsx = table of bioproject information

HV3_table2_master_table.xlsx = table with lots of information for each virus OTU

HV3_table3_mash_CHVD_genbank.xlsx = table of cognates between full length GenBank sequences and Cenote Human Virome Database sequences

HV3_table4_mash_CHVD_GVD.xlsx = table of cognates between Gregory et al (Gut Virome Database) sequences and Cenote Human Virome Database sequences

HV3_table5_viromeqc_alignment99.xlsx = table with viromeQC and % alignment to Cenote Human Virome Database (clustered@99%) for ~ 1000 VLP sequencing runs from SRA

HV3_table6_phage_crisprs.xlsx = table with phage-phage CRISPR match network and putative bacterial hosts

HV3_table7_vOTUs_multiple_bodysites.xlsx = table of virus OTUs prevalent in more than 1 body site

HV3_table8_case-control_runs.xlsx = table with case/control information for all runs for each disease state analyzed

unclassified_virus_vcontact2_network.cys = network file generated by VContact2 with unclassified virus genomes