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Angus Sequence Data: Animal Donnie

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agdatacommons.nal.usda.gov2024-10-21 更新2025-01-21 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Angus_Sequence_Data_Animal_Donnie/24666030/1
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Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program does not have germplasm for this animal.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:Resource Title: Animal Donnie Sequence Data - SCINet .File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node33212/tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S138_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S138_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S2_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S2_L001_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WA02-i5-515-i7-98_S2_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WA02-i5-515-i7-98_S2_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA02_i5-515_i7-98_S357_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA02_i5-515_i7-98_S357_L002_R2_001.fastq.gzSCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node33212/Donnie.tar See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransferGlobus users: The files can also be accessed through Globus by following this data link. The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Bos taurus 牛科动物全基因组序列数据集。数据以“fastq”格式存储。国家动物种质资源项目未收录该动物的种质资源。每个文件包含两种版本,因采用双端测序技术所致。每条数据线(共210条)对应两个读取序列(正向和反向),总计420个序列。本数据集的示意图收录于收集数据集中。图示中,两个读取序列分别对应读取1和读取3。数据集包含的资源如下: 资源标题:动物Donnie序列数据 - SCINet 文件名:网页,网址:https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node33212/tar文件,包含14个文件。文件列表如下: RAPiD-Genomics_F112_CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S138_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S138_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA02-i5-515-i7-98_S2_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU_136201_P001_WA02_i5-515_i7-98_S2_L001_R2_001.fastq.gz RAPiD-Genomics-F114-CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU_136201_P001_WA02_i5-515_i7-98_S2_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WA02_i5-515_i7-98_S2_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA02_i5-515_i7-98_S357_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WA02_i5-515_i7-98_S357_L002_R2_001.fastq.gz SCINet用户:可在此位置使用有效的SCINet账户访问/检索.tar文件:/LTS/ADCdatastorage/NAL/published/node33212/Donnie.tar。有关移动大型文件的更多信息,请参阅SCINet文件传输指南:https://scinet.usda.gov/guides/data/datatransfer Globus用户:通过遵循此数据链接,用户也可以通过Globus访问文件。用户需要登录Globus以检索此数据。账户免费,并提供多种登录选项。创建账户的说明位于登录页面。
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