Genome assemblies from "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative"
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https://figshare.com/articles/dataset/Genome_assemblies_from_The_domestication_of_Cucurbita_argyrosperma_as_revealed_by_the_genome_of_its_wild_relative_/14370584
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Chromosome-level genome assemblies of <i>Cucurbita argyrosperma</i> subsp. <i>argyrosperma</i> and <i>Cucurbita argyrosperma</i> subsp. <i>sororia</i>. These results are published in the paper "The domestication of <i>Cucurbita argyrosperma</i> as revealed by the genome of its wild relative" in Horticulture Research.<br>Each genome contains the following files:<br>- Genome_sequences -> Genome sequences in FASTA format of the nuclear genome (20 chromosomes + unscaffolded contigs), the mitochondrial genomes (fragmented) and the chloroplast genomes (complete circularized). - Gene_annotation -> Gene models predicted within the nuclear genomes in GFF3 format.<br> - Gene_sequences -> FASTA sequences of the predicted gene models, including the amino acid sequences and the CDSs of the protein-coding genes, as well as the lincRNA transcripts in the case of <i>C. argyrosperma</i> subsp. <i>argyrosperma</i>. - Functional_annotation -> InterProScan and Swiss-Prot annotations in tab-separated tables. The GO annotations for each gene are also included in tab-separated tables, which were extracted directly from the InterProScan results.
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figshare
创建时间:
2021-04-04



