Additional file 2 of Field-crop transcriptome models are enhanced by measurements in systematically controlled environments

Additional file 2: Table S1 73 environmental conditions used in this study. Table S2 Sample attributes used in this study. Table S3 Enriched gene ontology in each module. Table S4 Enriched KEGG pathway in each module. Table S5 List of genes in module 5. Table S6 List of genes with positive correlation in expression with air temperature. Table S7 List of genes with negative correlation in expression with air temperature. Table S8 Comparison of the relative frequency with which radiation and temperature are selected as predictors for representative genes across models in Koshihikari. Table S9 Enriched gene ontology terms and KEGG pathways in gene clusters whose expression of the representative genes was more frequently predicted by radiation or temperature than by the other predictor across models in Koshihikari. Table S10 Comparison of the relative frequency with which radiation and temperature are selected as predictors for representative genes across models in Takanari. Table S11 Enriched gene ontology terms and KEGG pathways in gene clusters whose expression of the representative genes was more frequently predicted by radiation or temperature than by the other predictor across models in Takanari. Table S12 List of the representative genes whose predictors were temperature in more than 80% of the field models but radiation in more than 80% of the mixed models. Table S13 Enriched gene ontology terms and KEGG pathways in gene clusters whose expression of the representative genes was predicted by temperature in more than 80% of the field models but by radiation in more than 80% of the mixed models. Table S14 List of the representative genes whose predictors were radiation in more than 80% of the field models and the mixed models. Table S15 Enriched gene ontology terms and KEGG pathways in gene clusters whose expression of the representative genes was predicted by radiation in more than 80% of the field models and the mixed models. Table S16 List of the representative genes whose predictors were temperature in more than 80% of the field models and the mixed models. Table S17 Enriched gene ontology terms and KEGG pathways in gene clusters whose expression of the representative genes was predicted by temperature in more than 80% of the field models and the mixed models. Table S18 List of the representative genes for which the prediction performance was better in the GC or mixed model than in the field model in Koshihikari. Table S19 Gene ontology terms and KEGG pathways enriched in the genes with better prediction performance in the GC or mixed model than in the field model in Koshihikari. Table S20 List of the representative genes for which the prediction performance was better in the GC or mixed model than in the field model in Takanari. Table S21 Gene ontology terms and KEGG pathways enriched in the genes with better prediction performance in the GC or mixed model than in the field model in Takanari.