Genomic language model predicts protein co-regulation and function

Name: Genomic language model predicts protein co-regulation and function
Creator: Kellogg; Harvard University
Published: 2023-04-22T00:00:00+08:00

Zenodo2023-04-22 更新2026-04-07 收录

蛋白质功能预测

基因共调控预测

数据链接：

https://zenodo.org/doi/10.5281/zenodo.7855545 数据链接链接失效反馈

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资源简介：

Model for "Genomic language model predicts protein co-regulation and function"

提供机构：

Kellogg; Harvard University

创建时间：

2023-04-22

Protein-FN/Protein-FN

蛋白质功能预测

生物信息学

Protein-FN数据集是一个专门为蛋白质功能预测、基序识别和发现等生物学任务设计的蛋白质功能数据集。它包含了来自蛋白质数据库PDB的9014个蛋白质的多样化1D氨基酸序列、3D蛋白质结构以及功能性质。这些蛋白质经过生物专家团队的检查，分为六类：蛋白酶、激酶、受体、碳酸酐酶、磷酸酶和异构酶。其中，激酶、磷酸酶、蛋白酶和受体在信号传导中扮演关键角色，大多数药物都作用于参与信号传导的蛋白质。异构酶和

Hugging Face2025-05-28 更新110

LDHU3_10.1220

蛋白质功能预测

利什曼原虫基因组注释

Hypothetical protein - conserved; Leishmania donovani (HU3 strain)

Mendeley Data80

Additional file 2: Table S1. of Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F)

昆虫生殖蛋白质组学

蛋白质功能预测

Melanoplus sanguinipes Seminal fluid proteins identified by mass-spectrometry. Predicted function based on the annotation and BLAST2GO. (XLSX 84 kb)

Figshare2016-12-14 更新00

Protein function prediction using pre-trained ELMO embeddings

蛋白质功能预测

ELMo嵌入

This dataset includes the data for training the protein function prediction models at github.com/stamakro/GCN-for-Structure-and-Function. For each protein, a pickle file is provided, containing its se

Mendeley Data2024-03-27 更新100

The results of DCN-based aggregated neighbor-counting method on 66 randomly selected proteins.

蛋白质功能预测

The ways of calculating precision and recall can be found at the captions of Table 4 and Table 3, respectively. Explanations of the best semantic similarity score can be found at the caption of Table

NIAID Data Ecosystem30

Genomic language model predicts protein co-regulation and function

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